plink list
--clump-range, With --clump and a region list file, report overlaps between clumps and ..... --merge-list, Merge multiple PLINK filesets with the main input fileset. ,For example,. plink --file text_fileset --maf 0.05 --make-bed --out binary_fileset ... The 'list' modifier causes a genotype-based list to be generated. This does not ... ,跳到 tags.list - TAGS, '|'-delimited list of IDs of other variants tagging this (or 'NONE') ... Since this format is new to PLINK 1.9, it is tab-delimited by default; ... ,PLINK 1.9 includes much faster implementations of PLINK 1.07's LD-based .... (same syntax as --snps), and --ld-snp-list loads variant IDs from the given file. ,This is a brief list of all file extensions generated by PLINK 1.9, along with content summaries and links to the associated flag(s). See the file formats appendix for ... ,This is a brief list of all file extensions generated by PLINK 2.0, along with content summaries and links to the associated flag(s). See the file formats appendix for ... , plink --gene-report run1.assoc --gene-list glist-hg18. which assumes the file run1.assoc will have a standard header row containing the fields ..., would now report in the LOG file. Reading allele coding list from [ recode.txt ] Read allele codes for 2 SNPs and the plink.raw file would read,This is a comprehensive update to Shaun Purcell's PLINK command-line ... --hap, --hap-window, --hap-snps5; --proxy-assoc, --proxy-impute 5; --cnv-list, --cfile, ... ,These files were created by Shaun Purcell for PLINK 1.02 (+ gPLINK + Haploview), but ... These lists are valid input for flags such as --make-set, '--extract range', ...
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 plink list 相關參考資料
Complete flag index - PLINK 1.9 - cog-genomics.org
--clump-range, With --clump and a region list file, report overlaps between clumps and ..... --merge-list, Merge multiple PLINK filesets with the main input fileset. https://www.cog-genomics.org Data management - PLINK 1.9 - cog-genomics.org
For example,. plink --file text_fileset --maf 0.05 --make-bed --out binary_fileset ... The 'list' modifier causes a genotype-based list to be generated. This does not ... https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
跳到 tags.list - TAGS, '|'-delimited list of IDs of other variants tagging this (or 'NONE') ... Since this format is new to PLINK 1.9, it is tab-delimited by default; ... https://www.cog-genomics.org Linkage disequilibrium - PLINK 1.9 - cog-genomics.org
PLINK 1.9 includes much faster implementations of PLINK 1.07's LD-based .... (same syntax as --snps), and --ld-snp-list loads variant IDs from the given file. https://www.cog-genomics.org Output file list - PLINK 1.9 - cog-genomics.org
This is a brief list of all file extensions generated by PLINK 1.9, along with content summaries and links to the associated flag(s). See the file formats appendix for ... https://www.cog-genomics.org Output file list - PLINK 2.0 - cog-genomics.org
This is a brief list of all file extensions generated by PLINK 2.0, along with content summaries and links to the associated flag(s). See the file formats appendix for ... https://www.cog-genomics.org PLINK
plink --gene-report run1.assoc --gene-list glist-hg18. which assumes the file run1.assoc will have a standard header row containing the fields ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis toolset
would now report in the LOG file. Reading allele coding list from [ recode.txt ] Read allele codes for 2 SNPs and the plink.raw file would read http://zzz.bwh.harvard.edu PLINK 1.9 - cog-genomics.org
This is a comprehensive update to Shaun Purcell's PLINK command-line ... --hap, --hap-window, --hap-snps5; --proxy-assoc, --proxy-impute 5; --cnv-list, --cfile, ... https://www.cog-genomics.org Resources - PLINK 1.9 - cog-genomics.org
These files were created by Shaun Purcell for PLINK 1.02 (+ gPLINK + Haploview), but ... These lists are valid input for flags such as --make-set, '--extract range', ... https://www.cog-genomics.org |