plink -- condition
Have you verified that those variant IDs are actually present in your main dataset?,Refer to the PLINK 1.07 documentation for more details about the statistical tests .... By default, --condition adds a single variant's allelic dosage as a covariate, ... , The basic association test is for a disease trait and is based on comparing allele frequencies between cases and controls (asymptotic and ...,--bmerge, Merge a PLINK 1 binary fileset with the main input fileset. .... --condition-list, Add variants named in a file as covariates for --linear/--logistic. ,(When there are multiple negative match conditions, PLINK 1.9 builds before 27 Jun 2015 incorrectly required only one attribute to be missing.) As mentioned ... , For binary disease traits, the test is based on a likelihood ratio test. ... +++ PLINK conditional haplotype test results +++ 5 SNPs, and 6 common ...,This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK's ... ,covar. condition ... PLINK 2.00 alpha. PLINK 2.0 alpha was developed by Christopher Chang, with support from GRAIL, Inc. and Human Longevity, Inc., and ... , NOTE These data do not, of course, represent a realistic study design or a realistic disease model. The point of this exercise is simply to get ..., Basic input/output. --file, plink}, Specify .ped and .map files ..... --condition-list, filename}, Include additive effects of these SNPs in model.
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 plink -- condition 相關參考資料
--condition-list "file" by plink - Biostars
Have you verified that those variant IDs are actually present in your main dataset? https://www.biostars.org Association analysis - PLINK 1.9 - cog-genomics.org
Refer to the PLINK 1.07 documentation for more details about the statistical tests .... By default, --condition adds a single variant's allelic dosage as a covariate, ... https://www.cog-genomics.org Association analysis - PLINK: Whole genome data analysis ...
The basic association test is for a disease trait and is based on comparing allele frequencies between cases and controls (asymptotic and ... http://zzz.bwh.harvard.edu Complete flag index - PLINK 1.9 - cog-genomics.org
--bmerge, Merge a PLINK 1 binary fileset with the main input fileset. .... --condition-list, Add variants named in a file as covariates for --linear/--logistic. https://www.cog-genomics.org Input filtering - PLINK 1.9 - cog-genomics.org
(When there are multiple negative match conditions, PLINK 1.9 builds before 27 Jun 2015 incorrectly required only one attribute to be missing.) As mentioned ... https://www.cog-genomics.org PLINK
For binary disease traits, the test is based on a likelihood ratio test. ... +++ PLINK conditional haplotype test results +++ 5 SNPs, and 6 common ... http://zzz.bwh.harvard.edu PLINK 1.9 - cog-genomics.org
This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK's ... https://www.cog-genomics.org PLINK 2.0 - cog-genomics.org
covar. condition ... PLINK 2.00 alpha. PLINK 2.0 alpha was developed by Christopher Chang, with support from GRAIL, Inc. and Human Longevity, Inc., and ... https://www.cog-genomics.org PLINK tutorial - PLINK: Whole genome data analysis toolset
NOTE These data do not, of course, represent a realistic study design or a realistic disease model. The point of this exercise is simply to get ... http://zzz.bwh.harvard.edu Reference - PLINK: Whole genome data analysis toolset
Basic input/output. --file, plink}, Specify .ped and .map files ..... --condition-list, filename}, Include additive effects of these SNPs in model. http://zzz.bwh.harvard.edu |