plink info
The INFO metric is calculated based on the entire file, based on the ratio of empirical and expected variance in dosage. Values closer to 1 ...,If you actually want --make-bed/--recode to erase this information, use --set-hh-missing. (The scope of this flag is a bit wider than for PLINK 1.07, since commands ... ,INFO, R-squared quality metric/information content. 'BETA'/'OR ... Variant information + sample ID + genotype call binary file, loaded with --bcf. Cannot currently ... ,This is a brief list of all file extensions generated by PLINK 1.9, along with content summaries and links to ... PLINK variant information file, part of binary fileset. , The fields INFO and NPRX refer to how well PLINK managed, if at all, to impute the SNP. If NPRX is zero, then it could not be even poorly ..., The plink.fam gives the ID, sex and phenotype information for each individual. The order of individuals in this file is the same as the order ...,VCF/BCF importers now default to compressing the temporary .pvar file, so that files with lots of INFO field content don't require a disproportionally large amount ... ,It is designed to support filtering on INFO-like values stored in a separate tab-delimited file. By default, values are read from column 2 of the file, and variant IDs ...
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 plink info 相關參考資料
Analysis of dosage data - PLINK: Whole genome data ...
The INFO metric is calculated based on the entire file, based on the ratio of empirical and expected variance in dosage. Values closer to 1 ... https://zzz.bwh.harvard.edu Data management - PLINK 1.9 - cog-genomics.org
If you actually want --make-bed/--recode to erase this information, use --set-hh-missing. (The scope of this flag is a bit wider than for PLINK 1.07, since commands ... https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
INFO, R-squared quality metric/information content. 'BETA'/'OR ... Variant information + sample ID + genotype call binary file, loaded with --bcf. Cannot currently ... https://www.cog-genomics.org Output file list - PLINK 1.9 - cog-genomics.org
This is a brief list of all file extensions generated by PLINK 1.9, along with content summaries and links to ... PLINK variant information file, part of binary fileset. https://www.cog-genomics.org PLINK
The fields INFO and NPRX refer to how well PLINK managed, if at all, to impute the SNP. If NPRX is zero, then it could not be even poorly ... https://zzz.bwh.harvard.edu plink --file data - PLINK: Whole genome data analysis toolset
The plink.fam gives the ID, sex and phenotype information for each individual. The order of individuals in this file is the same as the order ... https://zzz.bwh.harvard.edu PLINK 2.00 alpha - cog-genomics.org
VCF/BCF importers now default to compressing the temporary .pvar file, so that files with lots of INFO field content don't require a disproportionally large amount ... https://www.cog-genomics.org Standard data input - PLINK 2.0 - cog-genomics.org
It is designed to support filtering on INFO-like values stored in a separate tab-delimited file. By default, values are read from column 2 of the file, and variant IDs ... https://www.cog-genomics.org |