plink -- make bed
This page describes the format of binary PED (BED) files. ... plink --file test --make-bed --out test ... http://pngu.mgh.harvard.edu/purcell/plink/ ...,The input files need to be in PLINK binary format, e.g., ex.bed, ex.fam, and ex.bim. There are ... plink2 --vcf example.vcf.gz --make-bed --out ex. I understand that ... , This is also supported directly by PLINK 1.9. plink --bfile [filename prefix] --recode vcf --out [VCF prefix]. (You may want to replace "vcf" with ...,--make-bed creates a new PLINK 1 binary fileset, after applying sample/variant ... --make-just-bim is a variant of --make-bed which only generates a .bim file, and ... ,跳到 bed - Must be accompanied by .bim and .fam files. Loaded with --bfile; generated in many situations, most notably when the --make-bed command is ... ,Note that this is slightly different from PLINK 1.07's behavior when the main input ... If variants have been assigned to sets (via --set/--make-set), --gene takes a .... 1.07 --me was used either with --set-me-missing or without --make-bed/--recode,&, As well as imputing genotypes (either making the most likely call, or outputting the ... plink --bfile mydata --chr 1 --make-bed --out data-1 ..., By default, any --recode option, and also --make-bed will preserve all genotypes exactly as they are. To set to missing Mendel errors or ..., When using a data generation command (e.g. --make-bed, --recode, etc) as opposed to an analysis command, then by default the phenotype is ...,The --bfile flag causes the binary fileset plink.bed + plink.bim + plink.fam to be ... in service for more than half a year, it may be correct to stick with --make-bed.
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 plink -- make bed 相關參考資料
BED file format - PLINK: Whole genome data analysis toolset
This page describes the format of binary PED (BED) files. ... plink --file test --make-bed --out test ... http://pngu.mgh.harvard.edu/purcell/plink/ ... http://zzz.bwh.harvard.edu Converting VCF to PLINK .bed binary fileset to check for pedigree ...
The input files need to be in PLINK binary format, e.g., ex.bed, ex.fam, and ex.bim. There are ... plink2 --vcf example.vcf.gz --make-bed --out ex. I understand that ... https://www.biostars.org Create VCF file from .bim, .fam and .bed file - Biostars
This is also supported directly by PLINK 1.9. plink --bfile [filename prefix] --recode vcf --out [VCF prefix]. (You may want to replace "vcf" with ... https://www.biostars.org Data management - PLINK 1.9 - cog-genomics.org
--make-bed creates a new PLINK 1 binary fileset, after applying sample/variant ... --make-just-bim is a variant of --make-bed which only generates a .bim file, and ... https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
跳到 bed - Must be accompanied by .bim and .fam files. Loaded with --bfile; generated in many situations, most notably when the --make-bed command is ... https://www.cog-genomics.org Input filtering - PLINK 1.9 - cog-genomics.org
Note that this is slightly different from PLINK 1.07's behavior when the main input ... If variants have been assigned to sets (via --set/--make-set), --gene takes a .... 1.07 --me was used either... https://www.cog-genomics.org PLINK
As well as imputing genotypes (either making the most likely call, or outputting the ... plink --bfile mydata --chr 1 --make-bed --out data-1 ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis toolset
By default, any --recode option, and also --make-bed will preserve all genotypes exactly as they are. To set to missing Mendel errors or ... http://zzz.bwh.harvard.edu PLINK format - PLINK: Whole genome data analysis toolset
When using a data generation command (e.g. --make-bed, --recode, etc) as opposed to an analysis command, then by default the phenotype is ... http://zzz.bwh.harvard.edu Standard data input - PLINK 1.9 - cog-genomics.org
The --bfile flag causes the binary fileset plink.bed + plink.bim + plink.fam to be ... in service for more than half a year, it may be correct to stick with --make-bed. https://www.cog-genomics.org |