plink -- adjust
Refer to the PLINK 1.07 documentation for more details about the statistical tests employed. When the ... 'fisher-midp' also applies Lancaster's mid-p adjustment. , with --assoc will make PLINK report allele counts, rather than ..... The p-value for the SNP term or terms in the model will be adjusted for the ...,跳到 adjusted - *.adjusted (basic multiple-testing corrections). Produced by --adjust. A text file with a header line, and then one line per set or polymorphic ... , Certain PLINK commands allow variable options to be passed, in addition to the standard arguments. These typically modify the behavior of the ..., plink --file data --recodeAD --recode-allele recode.txt ..... to set the number of SNPs considered upstream and downstream; the maximum ...,We recommend migrating away from PLINK 1 here, but if that's not practical, keep a permanent copy of the PLINK 1.07 binary around and modify the relevant ... ,PLINK 2.0 alpha was developed by Christopher Chang, with support from GRAIL, Inc. and Human Longevity, Inc., and substantial input from Stanford's ... , In this tutorial, we will consider using PLINK to analyse example data: ..... plink --bfile hapmap1 --pheno pop.phe --assoc --adjust --out as3., --file, plink}, Specify .ped and .map files ..... plink.adjust, --adjust, Adjusted significance values (multiple testing). plink.assoc, --assoc ...,The --bfile flag causes the binary fileset plink.bed + plink.bim + plink.fam to be ... and the autoconverter functions will be adjusted then to target the new format.
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 plink -- adjust 相關參考資料
Association analysis - PLINK 1.9 - cog-genomics.org
Refer to the PLINK 1.07 documentation for more details about the statistical tests employed. When the ... 'fisher-midp' also applies Lancaster's mid-p adjustment. https://www.cog-genomics.org Association analysis - PLINK: Whole genome data analysis toolset
with --assoc will make PLINK report allele counts, rather than ..... The p-value for the SNP term or terms in the model will be adjusted for the ... http://zzz.bwh.harvard.edu File format reference - PLINK 1.9 - cog-genomics.org
跳到 adjusted - *.adjusted (basic multiple-testing corrections). Produced by --adjust. A text file with a header line, and then one line per set or polymorphic ... https://www.cog-genomics.org PLINK
Certain PLINK commands allow variable options to be passed, in addition to the standard arguments. These typically modify the behavior of the ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis toolset
plink --file data --recodeAD --recode-allele recode.txt ..... to set the number of SNPs considered upstream and downstream; the maximum ... http://zzz.bwh.harvard.edu PLINK 1.9 - cog-genomics.org
We recommend migrating away from PLINK 1 here, but if that's not practical, keep a permanent copy of the PLINK 1.07 binary around and modify the relevant ... https://www.cog-genomics.org PLINK 2.0 - cog-genomics.org
PLINK 2.0 alpha was developed by Christopher Chang, with support from GRAIL, Inc. and Human Longevity, Inc., and substantial input from Stanford's ... https://www.cog-genomics.org PLINK tutorial - PLINK: Whole genome data analysis toolset
In this tutorial, we will consider using PLINK to analyse example data: ..... plink --bfile hapmap1 --pheno pop.phe --assoc --adjust --out as3. http://zzz.bwh.harvard.edu Reference - PLINK: Whole genome data analysis toolset
--file, plink}, Specify .ped and .map files ..... plink.adjust, --adjust, Adjusted significance values (multiple testing). plink.assoc, --assoc ... http://zzz.bwh.harvard.edu Standard data input - PLINK 1.9 - cog-genomics.org
The --bfile flag causes the binary fileset plink.bed + plink.bim + plink.fam to be ... and the autoconverter functions will be adjusted then to target the new format. https://www.cog-genomics.org |