plink --pheno
Refer to the PLINK 1.07 documentation for more details about the statistical tests .... If either flag is used with --all-pheno, the type of regression will automatically ... ,--all-pheno, For basic association tests, loop through all phenotypes in --pheno file. ... --bmerge, Merge a PLINK 1 binary fileset with the main input fileset. ,(PLINK forces you to combine '01' with --,output-}missing-genotype when this is necessary to ..... plink --bfile merged --make-pheno source1.fam '*' --flip-scan. ,This page describes specialized PLINK input and output file formats which are ...... The .recode.pheno.txt file produced by PLINK is just a sequence of sample ... , This is explained at the beginning of the documentation for --pheno: --pheno causes phenotype values to be read from the 3rd column of the ..., plink --file data --recodeAD --recode-allele recode.txt ...... As with --pheno and --within, you can specify an offset to read the filter from a column ..., The name of the file is by default plink.ext where .ext will change ... plink --file mydata --pheno pheno.raw --assoc --maf 0.05 --out run1. then the ..., In this tutorial, we will consider using PLINK to analyse example data: ..... plink --bfile hapmap1 --pheno pop.phe --assoc --adjust --out as3., If your alternate phenotype file contains more than one phenotype, then adding the --all-pheno flag will make PLINK cycle over each phenotype ...,Irregularly-formatted PLINK text files. --no-fid --no-parents --no-sex --no-pheno. These allow you to use .fam or .ped files which lack family ID, parental ID, sex, ...
| 相關軟體 KiTTY 資訊 | |
|---|---|
 plink --pheno 相關參考資料
Association analysis - PLINK 1.9 - cog-genomics.org
Refer to the PLINK 1.07 documentation for more details about the statistical tests .... If either flag is used with --all-pheno, the type of regression will automatically ... https://www.cog-genomics.org Complete flag index - PLINK 1.9 - cog-genomics.org
--all-pheno, For basic association tests, loop through all phenotypes in --pheno file. ... --bmerge, Merge a PLINK 1 binary fileset with the main input fileset. https://www.cog-genomics.org Data management - PLINK 1.9 - cog-genomics.org
(PLINK forces you to combine '01' with --,output-}missing-genotype when this is necessary to ..... plink --bfile merged --make-pheno source1.fam '*' --flip-scan. https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
This page describes specialized PLINK input and output file formats which are ...... The .recode.pheno.txt file produced by PLINK is just a sequence of sample ... https://www.cog-genomics.org GWAS in Plink - phenotype file format - Biostars
This is explained at the beginning of the documentation for --pheno: --pheno causes phenotype values to be read from the 3rd column of the ... https://www.biostars.org plink --file data --recode - PLINK: Whole genome data analysis toolset
plink --file data --recodeAD --recode-allele recode.txt ...... As with --pheno and --within, you can specify an offset to read the filter from a column ... http://zzz.bwh.harvard.edu PLINK format - PLINK: Whole genome data analysis toolset
The name of the file is by default plink.ext where .ext will change ... plink --file mydata --pheno pheno.raw --assoc --maf 0.05 --out run1. then the ... http://zzz.bwh.harvard.edu PLINK tutorial - PLINK: Whole genome data analysis toolset
In this tutorial, we will consider using PLINK to analyse example data: ..... plink --bfile hapmap1 --pheno pop.phe --assoc --adjust --out as3. http://zzz.bwh.harvard.edu Quantitative trait - PLINK: Whole genome data analysis toolset
If your alternate phenotype file contains more than one phenotype, then adding the --all-pheno flag will make PLINK cycle over each phenotype ... http://zzz.bwh.harvard.edu Standard data input - PLINK 1.9 - cog-genomics.org
Irregularly-formatted PLINK text files. --no-fid --no-parents --no-sex --no-pheno. These allow you to use .fam or .ped files which lack family ID, parental ID, sex, ... https://www.cog-genomics.org |