chr 24 in plink
Irregular output coding. --output-chr <MT code>. Normally, autosomal/sex/mitochondrial chromosome codes in PLINK output files are numeric, e.g. '23 ... ,2019年1月9日 — —chr-set is required for chromosome 24 here. Otherwise, it is treated as chrY. It may also affect the results for chromosome 23. To be safe, you ... ,2020年1月7日 — I tried using --allow-extra-chr 0 to include these but it doesn't seem to ... Jan 22 12:06:24 2020 Random number seed: 1579655184 8192 MB ... ,2017年1月25日 — ./plink --bfile mydata --update-map chr-codes.txt --update-chr --make-bed --out mydata2. In both case, the format of the input file should be two ... ,2017年1月25日 — ./plink --bfile mydata --update-map chr-codes.txt --update-chr --make-bed --out mydata2. In both case, the format of the input file should be two ... ,was applied simultaneously, and the remaining variant set was not contiguous (so if your only variant filter was --chr on a single chromosome, this bug did not ... ,--output-chr · --split-par/--merge-par · --set-all-var-ids ... Operating system, Development (28 Oct), Alpha 2.3 final (24 Jan). Linux AVX2 Intel1, download ... ,2017年1月25日 — we see plink.frq is. CHR SNP A1 A2 MAF NM 1 snp1 C A 0.25 8 23 snp2 C A 0.2 5 24 snp3 C A 0 1 25 snp4 C A 0.25 ...
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 chr 24 in plink 相關參考資料
Data management - PLINK 1.9 - cog-genomics.org
Irregular output coding. --output-chr <MT code>. Normally, autosomal/sex/mitochondrial chromosome codes in PLINK output files are numeric, e.g. '23 ... https://www.cog-genomics.org Genome-wide LD PLINK | empty file for chromosome 24
2019年1月9日 — —chr-set is required for chromosome 24 here. Otherwise, it is treated as chrY. It may also affect the results for chromosome 23. To be safe, you ... https://www.biostars.org PLINK --allow-extra-chr error - Biostars
2020年1月7日 — I tried using --allow-extra-chr 0 to include these but it doesn't seem to ... Jan 22 12:06:24 2020 Random number seed: 1579655184 8192 MB ... https://www.biostars.org plink --bfile data --filter data.fam 2 - PLINK: Whole genome ...
2017年1月25日 — ./plink --bfile mydata --update-map chr-codes.txt --update-chr --make-bed --out mydata2. In both case, the format of the input file should be two ... http://zzz.bwh.harvard.edu plink --file data --flip list.txt - PLINK: Whole genome data ...
2017年1月25日 — ./plink --bfile mydata --update-map chr-codes.txt --update-chr --make-bed --out mydata2. In both case, the format of the input file should be two ... https://zzz.bwh.harvard.edu PLINK 1.90 beta - cog-genomics.org
was applied simultaneously, and the remaining variant set was not contiguous (so if your only variant filter was --chr on a single chromosome, this bug did not ... https://www.cog-genomics.org PLINK 2.00 alpha - cog-genomics.org
--output-chr · --split-par/--merge-par · --set-all-var-ids ... Operating system, Development (28 Oct), Alpha 2.3 final (24 Jan). Linux AVX2 Intel1, download ... https://www.cog-genomics.org PLINK format - PLINK: Whole genome data analysis toolset
2017年1月25日 — we see plink.frq is. CHR SNP A1 A2 MAF NM 1 snp1 C A 0.25 8 23 snp2 C A 0.2 5 24 snp3 C A 0 1 25 snp4 C A 0.25 ... http://zzz.bwh.harvard.edu |