remove snp in plink
Similarly, --keep-fam and --remove-fam accept text files with family IDs in the first ... Similarly, --exclude-snp specifies a single variant to exclude; this can also be ... ,2017年1月25日 — All the per-SNP summary statistics described below are conducted after removing individuals with high missing genotype rates, as defined by ... ,2017年1月25日 — Missing rate per SNP. Subsequent analyses can be set to automatically exclude SNPs on the basis of missing genotype rate, with the --geno ... ,2017年1月25日 — A phenotype has been simulated based on the genotype at one SNP. ... This particularly high proportion of removed SNPs is based on the fact ... ,2018年2月11日 — To automatically exclude all SNPs on the basis of missing genotype rate, you can use the --geno 0 option. The default is to include all SNPS ... ,2017年1月25日 — plink --file data --recode12 (where, as usual, "plink" would be replaced by any specified --out filename} ). Unless manually specified, for all these options, the usual filters for missingness and allele frequency will be set so as,2018年2月11日 — Your command is correct, but you should add two options: --out and --recode . If you don't specify these, plink executes the commands and ... ,Check out the PLINK manual (https://www.cog-genomics.org/plink/1.9/filter) and the --geno option, which allows you to filter for variants with a defined missing/ ... ,--keep/--remove now support a wider variety of sample ID file formats: ... Similarly, --exclude-snp specifies a single variant to exclude; this can also be combined ...
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 remove snp in plink 相關參考資料
Input filtering - PLINK 1.9 - cog-genomics.org
Similarly, --keep-fam and --remove-fam accept text files with family IDs in the first ... Similarly, --exclude-snp specifies a single variant to exclude; this can also be ... https://www.cog-genomics.org PLINK
2017年1月25日 — All the per-SNP summary statistics described below are conducted after removing individuals with high missing genotype rates, as defined by ... https://zzz.bwh.harvard.edu plink --file data --mind 0.1 --recode - PLINK: Whole genome ...
2017年1月25日 — Missing rate per SNP. Subsequent analyses can be set to automatically exclude SNPs on the basis of missing genotype rate, with the --geno ... http://zzz.bwh.harvard.edu PLINK tutorial - PLINK: Whole genome data analysis toolset
2017年1月25日 — A phenotype has been simulated based on the genotype at one SNP. ... This particularly high proportion of removed SNPs is based on the fact ... http://zzz.bwh.harvard.edu PLINK: removing SNPs missing in all samples - Biostars
2018年2月11日 — To automatically exclude all SNPs on the basis of missing genotype rate, you can use the --geno 0 option. The default is to include all SNPS ... https://www.biostars.org PLINK: Whole genome data analysis toolset
2017年1月25日 — plink --file data --recode12 (where, as usual, "plink" would be replaced by any specified --out filename} ). Unless manually specified, for all these options, the usual filters... https://zzz.bwh.harvard.edu Remove Some Snps In Plink - Biostars
2018年2月11日 — Your command is correct, but you should add two options: --out and --recode . If you don't specify these, plink executes the commands and ... https://www.biostars.org Removing SNPs with over 2% missing rate in plink - Biostars
Check out the PLINK manual (https://www.cog-genomics.org/plink/1.9/filter) and the --geno option, which allows you to filter for variants with a defined missing/ ... https://www.biostars.org Standard data input - PLINK 2.0 - cog-genomics.org
--keep/--remove now support a wider variety of sample ID file formats: ... Similarly, --exclude-snp specifies a single variant to exclude; this can also be combined ... https://www.cog-genomics.org |