plink sample data
bim + .fam. Any samples/variants removed from the current analysis are also not present in this fileset. (This is the --make-bed step.) ... ,Since there are six samples, each marker block has size 2 bytes (six divided by four, rounded up). Thus genotype data for the first marker ('snp1') is stored in the ... ,Variant information + sample ID + genotype call binary file. ... .bgen (Oxford variant info + genomic data binary file) ... .fam (PLINK sample information file). , plink.tped plink.fam. The first contains the genotype data, with SNPs as rows and individuals as columns, for example: if the original file was, 89 HapMap samples and 80K random SNPs. The first step is to obtain a working copy of PLINK and of the example data files. Make sure you ...,Tutorial data: example.zip (BWH mirror), which contains the following six files: wgas1.ped (sample whole-genome .ped data file) ... ,Standard data input. Most of PLINK's calculations operate on tables of samples and variant calls. The following flags are available for defining the form and ...
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 plink sample data 相關參考資料
Data management - PLINK 1.9 - cog-genomics.org
bim + .fam. Any samples/variants removed from the current analysis are also not present in this fileset. (This is the --make-bed step.) ... https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
Since there are six samples, each marker block has size 2 bytes (six divided by four, rounded up). Thus genotype data for the first marker ('snp1') is stored in the ... https://www.cog-genomics.org File format reference - PLINK 2.0 - cog-genomics.org
Variant information + sample ID + genotype call binary file. ... .bgen (Oxford variant info + genomic data binary file) ... .fam (PLINK sample information file). https://www.cog-genomics.org plink --file data - PLINK: Whole genome data analysis toolset
plink.tped plink.fam. The first contains the genotype data, with SNPs as rows and individuals as columns, for example: if the original file was https://zzz.bwh.harvard.edu PLINK tutorial - PLINK: Whole genome data analysis toolset
89 HapMap samples and 80K random SNPs. The first step is to obtain a working copy of PLINK and of the example data files. Make sure you ... http://zzz.bwh.harvard.edu Resources - PLINK 1.9 - cog-genomics.org
Tutorial data: example.zip (BWH mirror), which contains the following six files: wgas1.ped (sample whole-genome .ped data file) ... http://www.cog-genomics.org Standard data input - PLINK 1.9 - cog-genomics.org
Standard data input. Most of PLINK's calculations operate on tables of samples and variant calls. The following flags are available for defining the form and ... https://www.cog-genomics.org |