plink bp
This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK's ... ,For example,. plink --file text_fileset --maf 0.05 --make-bed --out binary_fileset .... --split-x <last bp position of head> <first bp position of tail> ['no-fail'] --split-x ... ,This page describes specialized PLINK input and output file formats which are identifiable by file ..... Variants with negative bp coordinates are ignored by PLINK. ,To reduce the potential for confusion, PLINK 2 normally errors out when multiple variant-inclusion filters (--extract, --from/--to, --from-bp/--to-bp, --snp, --snps) are ... ,Note that this is slightly different from PLINK 1.07's behavior when the main input .... and --bp-space excludes one variant from each pair closer than the given bp ... , This page describes the basic meta-analysis functions in PLINK, in which two or ... CHR SNP BP A1 F_A F_U A2 CHISQ P OR SE L95 U95 22 ..., plink --annotate myfile.assoc attrib=snp129.attrib.gz ranges=glist.txt ... CHR SNP BP P 1 rs3094315 792429 0.1521 1 rs6672353 817376 ..., CHR Chromosome SNP SNP ID BP Physical position (base-pair) A1 ... as well, PLINK will perform genotypic tests using Fisher's exact test., --file, plink}, Specify .ped and .map files ... --out, plink}, Specify output root filename ... --from-bp, bp}, Select SNPs within this window... --to-bp ..., plink --file data --recodeAD --recode-allele recode.txt ..... CHR Chromosome SNP SNP identifier for index SNP BP Base-pair position A1 Minor ...
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 plink bp 相關參考資料
PLINK 1.9 - cog-genomics.org
This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK's ... https://www.cog-genomics.org Data management - PLINK 1.9 - cog-genomics.org
For example,. plink --file text_fileset --maf 0.05 --make-bed --out binary_fileset .... --split-x <last bp position of head> <first bp position of tail> ['no-fail'] --split-x ... https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
This page describes specialized PLINK input and output file formats which are identifiable by file ..... Variants with negative bp coordinates are ignored by PLINK. https://www.cog-genomics.org Standard data input - PLINK 2.0 - cog-genomics.org
To reduce the potential for confusion, PLINK 2 normally errors out when multiple variant-inclusion filters (--extract, --from/--to, --from-bp/--to-bp, --snp, --snps) are ... https://www.cog-genomics.org Input filtering - PLINK 1.9 - cog-genomics.org
Note that this is slightly different from PLINK 1.07's behavior when the main input .... and --bp-space excludes one variant from each pair closer than the given bp ... https://www.cog-genomics.org Meta-analysis - PLINK: Whole genome data analysis toolset
This page describes the basic meta-analysis functions in PLINK, in which two or ... CHR SNP BP A1 F_A F_U A2 CHISQ P OR SE L95 U95 22 ... http://zzz.bwh.harvard.edu Result annotation - PLINK: Whole genome data analysis toolset
plink --annotate myfile.assoc attrib=snp129.attrib.gz ranges=glist.txt ... CHR SNP BP P 1 rs3094315 792429 0.1521 1 rs6672353 817376 ... http://zzz.bwh.harvard.edu plink --file mydata - PLINK: Whole genome data analysis toolset
CHR Chromosome SNP SNP ID BP Physical position (base-pair) A1 ... as well, PLINK will perform genotypic tests using Fisher's exact test. http://zzz.bwh.harvard.edu Reference - PLINK: Whole genome data analysis toolset
--file, plink}, Specify .ped and .map files ... --out, plink}, Specify output root filename ... --from-bp, bp}, Select SNPs within this window... --to-bp ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis ...
plink --file data --recodeAD --recode-allele recode.txt ..... CHR Chromosome SNP SNP identifier for index SNP BP Base-pair position A1 Minor ... http://zzz.bwh.harvard.edu |