plink random sampling
By default, PLINK does not impose any filters on minor allele ... In case/control samples, this test will be based on controls only, unless the ...,--recode creates a new text fileset, after applying sample/variant filters and other .... --zero-cluster takes a file with variant IDs in the first column and cluster IDs in ... , plink --bfile file1 --extract snps.subset.map --make-bed --out file3 ... you can also just use the UNIX sort to randomly grab lines out of your BIM ...,If samples are assigned to clusters (via --within/--family), --keep-clusters and --keep-cluster-names can be used individually or in combination to define a list of ... , Hi because you are using wrong input file, keep command ponly works on ped and map files, if you have only binary files (bed, bim, fam), use ..., Details on the format of a cluster file can be found here. ... For example, some proportion of the sample might only have been genotyped on a ..., Recode and reorder a sample .... Using the --recodeAD option generates the file plink-recode.raw: ..... Based on a random sampling (--thin)., In this tutorial, we will walk through using PLINK to work with the data, using a range of features: ... 89 HapMap samples and 80K random SNPs., PLINK is a free, open-source whole genome association analysis toolset, ... based on X chromosome SNPs; Tests of non-random genotyping failure ... tests for stratified samples; Dominant/recessive and general models ...,tells PLINK to load all variants between rs1111 and rs2222 inclusive, as well as ... Similarly, --thin-indiv removes samples at random by retaining each sample ...
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 plink random sampling 相關參考資料
Allele frequency - PLINK: Whole genome data analysis toolset
By default, PLINK does not impose any filters on minor allele ... In case/control samples, this test will be based on controls only, unless the ... http://zzz.bwh.harvard.edu Data management - PLINK 1.9 - cog-genomics.org
--recode creates a new text fileset, after applying sample/variant filters and other .... --zero-cluster takes a file with variant IDs in the first column and cluster IDs in ... https://www.cog-genomics.org How To Extract Random Snps From Whole Genome Data? - Biostars
plink --bfile file1 --extract snps.subset.map --make-bed --out file3 ... you can also just use the UNIX sort to randomly grab lines out of your BIM ... https://www.biostars.org Input filtering - PLINK 1.9 - cog-genomics.org
If samples are assigned to clusters (via --within/--family), --keep-clusters and --keep-cluster-names can be used individually or in combination to define a list of ... https://www.cog-genomics.org Keep A Subset Of Samples In Plink - Biostars
Hi because you are using wrong input file, keep command ponly works on ped and map files, if you have only binary files (bed, bim, fam), use ... https://www.biostars.org PLINK
Details on the format of a cluster file can be found here. ... For example, some proportion of the sample might only have been genotyped on a ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis toolset
Recode and reorder a sample .... Using the --recodeAD option generates the file plink-recode.raw: ..... Based on a random sampling (--thin). http://zzz.bwh.harvard.edu PLINK tutorial - PLINK: Whole genome data analysis toolset
In this tutorial, we will walk through using PLINK to work with the data, using a range of features: ... 89 HapMap samples and 80K random SNPs. http://zzz.bwh.harvard.edu PLINK: Whole genome data analysis toolset - Shaun Purcell
PLINK is a free, open-source whole genome association analysis toolset, ... based on X chromosome SNPs; Tests of non-random genotyping failure ... tests for stratified samples; Dominant/recessive and... http://zzz.bwh.harvard.edu Standard data input - PLINK 2.0 - cog-genomics.org
tells PLINK to load all variants between rs1111 and rs2222 inclusive, as well as ... Similarly, --thin-indiv removes samples at random by retaining each sample ... https://www.cog-genomics.org |