plink -- snps
All pairwise combinations of SNPs can be tested: although this may or may not be desirable in statistical terms, it is computationally feasible for ..., In particular, it is designed to indicate the order in which certain operations are performed (i.e. whether SNPs are excluded before or after ...,Note that this is slightly different from PLINK 1.07's behavior when the main .... --snps-only excludes all variants with one or more multi-character allele codes. , SNP SNP idenitifier OR Odds ratio (or BETA, etc) SE Standard error of ... SNPs, writing details to [ plink.prob ] Writing meta-analysis results to ..., PLINK includes a set of options to calculate pairwise linkage disequilibrium between SNPs, and to present or process this information in ..., The first contains the genotype data, with SNPs as rows and individuals as columns, for ... plink --file data --recodeAD --recode-allele recode.txt.,跳到 Extracting a SNP of interest - Finally, given you've identified a SNP, set of SNPs or region of interest, you might want to extract those SNPs as a ... , PLINK is a free, open-source whole genome association analysis ... subsets (SNPs or individuals); Flip strand of SNPs; Compress data in a ..., To automatically apply information about whether SNPs are functional, ... plink --annotate myfile.assoc attrib=snp129.attrib.gz ranges=glist.txt.,--snps-only excludes all variants with one or more multi-character allele codes. ... tells PLINK to load all variants between rs1111 and rs2222 inclusive, as well ...
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 plink -- snps 相關參考資料
Epistasis - PLINK: Whole genome data analysis toolset
All pairwise combinations of SNPs can be tested: although this may or may not be desirable in statistical terms, it is computationally feasible for ... http://zzz.bwh.harvard.edu Flow chart - PLINK: Whole genome data analysis toolset
In particular, it is designed to indicate the order in which certain operations are performed (i.e. whether SNPs are excluded before or after ... http://zzz.bwh.harvard.edu Input filtering - PLINK 1.9 - cog-genomics.org
Note that this is slightly different from PLINK 1.07's behavior when the main .... --snps-only excludes all variants with one or more multi-character allele codes. https://www.cog-genomics.org Meta-analysis - PLINK: Whole genome data analysis toolset
SNP SNP idenitifier OR Odds ratio (or BETA, etc) SE Standard error of ... SNPs, writing details to [ plink.prob ] Writing meta-analysis results to ... http://zzz.bwh.harvard.edu PLINK
PLINK includes a set of options to calculate pairwise linkage disequilibrium between SNPs, and to present or process this information in ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis toolset
The first contains the genotype data, with SNPs as rows and individuals as columns, for ... plink --file data --recodeAD --recode-allele recode.txt. http://zzz.bwh.harvard.edu PLINK tutorial - PLINK: Whole genome data analysis toolset
跳到 Extracting a SNP of interest - Finally, given you've identified a SNP, set of SNPs or region of interest, you might want to extract those SNPs as a ... http://zzz.bwh.harvard.edu PLINK: Whole genome data analysis toolset
PLINK is a free, open-source whole genome association analysis ... subsets (SNPs or individuals); Flip strand of SNPs; Compress data in a ... http://zzz.bwh.harvard.edu Result annotation - PLINK: Whole genome data analysis toolset
To automatically apply information about whether SNPs are functional, ... plink --annotate myfile.assoc attrib=snp129.attrib.gz ranges=glist.txt. http://zzz.bwh.harvard.edu Standard data input - PLINK 2.0 - cog-genomics.org
--snps-only excludes all variants with one or more multi-character allele codes. ... tells PLINK to load all variants between rs1111 and rs2222 inclusive, as well ... https://www.cog-genomics.org |