plink keep individual
--exclude-snp, Use ID to specify single variant to exclude, or center of window. --exclude- ... --keep-clusters, Filter out all samples not in clusters named in a file. ,This can only be used on a single sample's data (a one-line --keep file may come in handy here). There is currently no special handling of the XY pseudo- ... ,--keep accepts a space/tab-delimited text file with family IDs in the first column ... can be used individually or in combination to define a list of clusters to keep; ... , I am working with a VCF dataset and many individuals have IDs including an underscore. I want to... Keeping A Set Of Data For Qc In Plink. I am ...,We have designed this to match PLINK 1.07's order of operations (mostly ... Select single variant range by ID (--from, --to, --snp, --exclude-snp, --window, ... Set minor alleles to A1, unless --keep-allele-order or "--freq counts" was speci, The plink. fam gives the ID, sex and phenotype information for each individual. The order of individuals in this file is the same as the order across the columns of the TPED file. The FAM file is just the first six columns of the PED file (or literally t,pvar file (and conversely, when --vcf/--bcf is used with bare --keep-autoconv, the .pvar is not compressed). 10 Mar: Fixed --make-pgen segfault that occurred when ... ,You can analyze the text fileset while specifying (with --keep-autoconv) that you ... IDs to within-family IDs while setting all family IDs to a single value (default '0'). ,--keep/--remove now support a wider variety of sample ID file formats: If the first line ... --snps accepts a collection of individual variant IDs and variant ranges.
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 plink keep individual 相關參考資料
Complete flag index - PLINK 1.9 - cog-genomics.org
--exclude-snp, Use ID to specify single variant to exclude, or center of window. --exclude- ... --keep-clusters, Filter out all samples not in clusters named in a file. https://www.cog-genomics.org Data management - PLINK 1.9 - cog-genomics.org
This can only be used on a single sample's data (a one-line --keep file may come in handy here). There is currently no special handling of the XY pseudo- ... https://www.cog-genomics.org Input filtering - PLINK 1.9 - cog-genomics.org
--keep accepts a space/tab-delimited text file with family IDs in the first column ... can be used individually or in combination to define a list of clusters to keep; ... https://www.cog-genomics.org Keep A Subset Of Samples In Plink - Biostars
I am working with a VCF dataset and many individuals have IDs including an underscore. I want to... Keeping A Set Of Data For Qc In Plink. I am ... https://www.biostars.org Order of operations - PLINK 1.9 - cog-genomics.org
We have designed this to match PLINK 1.07's order of operations (mostly ... Select single variant range by ID (--from, --to, --snp, --exclude-snp, --window, ... Set minor alleles to A1, unless --k... https://www.cog-genomics.org plink --file data --recode - PLINK: Whole genome data analysis ...
The plink. fam gives the ID, sex and phenotype information for each individual. The order of individuals in this file is the same as the order across the columns of the TPED file. The FAM file is jus... http://zzz.bwh.harvard.edu PLINK 2.0 - cog-genomics.org
pvar file (and conversely, when --vcf/--bcf is used with bare --keep-autoconv, the .pvar is not compressed). 10 Mar: Fixed --make-pgen segfault that occurred when ... https://www.cog-genomics.org Standard data input - PLINK 1.9 - cog-genomics.org
You can analyze the text fileset while specifying (with --keep-autoconv) that you ... IDs to within-family IDs while setting all family IDs to a single value (default '0'). https://www.cog-genomics.org Standard data input - PLINK 2.0 - cog-genomics.org
--keep/--remove now support a wider variety of sample ID file formats: If the first line ... --snps accepts a collection of individual variant IDs and variant ranges. https://www.cog-genomics.org |