plink sample

相關問題 & 資訊整理

plink sample

--make-bed creates a new PLINK 1 binary fileset, after applying sample/variant filters and other operations below. For example,. plink --file text_fileset --maf 0.05 ... ,fam file.) The next two bits store the second sample's genotype code, and so on for the 3rd and 4th samples. The second byte stores genotype codes for the 5th ... ,eigenvec file is a text file with a header line and between 1+V and 3+V columns per sample, where V is the number of requested principal components. The first ... ,The following flags allow you to exclude samples and/or variants from an analysis batch based on a ... --attrib-indiv <sample attrib file> [boolean condition]. ,PLINK binary biallelic genotype table. .bed.vmaj, (automatic), Variant-major .bed file (when input .bed is sample-major) . , All commands involve typing plink at the command prompt (e.g. DOS ... results-working-sample-missingness-v1.22 --from rs66537222 --to ..., Recode and reorder a sample. A basic, but often useful feature, is to output a dataset: with the PED file markers reordered for physical position, ...,In addition, several key sample x sample and variant x variant matrix ... position-based SNP-like data for thousands of samples, and it is optimized for this setting. , 89 HapMap samples and 80K random SNPs. The first step is to obtain a working copy of PLINK and of the example data files. Make sure you ...,VCF files just contain sample IDs, instead of the distinct family and within-family IDs tracked by PLINK. We offer three ways to convert these IDs: --double-id causes ...

相關軟體 PuTTY 資訊

PuTTY
PuTTY 是一個免費的 Windows 和 Unix 平台的 Telnet 和 SSH 實現,以及一個 xterm 終端模擬器。它主要由 Simon Tatham 編寫和維護. 這些協議全部用於通過網絡在計算機上運行遠程會話。 PuTTY 實現該會話的客戶端:會話顯示的結束,而不是運行結束. 真的很簡單:在 Windows 計算機上運行 PuTTY,並告訴它連接到(例如)一台 Unix 機器。 ... PuTTY 軟體介紹

plink sample 相關參考資料
Data management - PLINK 1.9 - cog-genomics.org

--make-bed creates a new PLINK 1 binary fileset, after applying sample/variant filters and other operations below. For example,. plink --file text_fileset --maf 0.05&nbsp;...

https://www.cog-genomics.org

File format reference - PLINK 1.9 - cog-genomics.org

fam file.) The next two bits store the second sample&#39;s genotype code, and so on for the 3rd and 4th samples. The second byte stores genotype codes for the 5th&nbsp;...

https://www.cog-genomics.org

File format reference - PLINK 2.0 - cog-genomics.org

eigenvec file is a text file with a header line and between 1+V and 3+V columns per sample, where V is the number of requested principal components. The first&nbsp;...

https://www.cog-genomics.org

Input filtering - PLINK 1.9 - cog-genomics.org

The following flags allow you to exclude samples and/or variants from an analysis batch based on a ... --attrib-indiv &lt;sample attrib file&gt; [boolean condition].

https://www.cog-genomics.org

Output file list - PLINK 1.9 - cog-genomics.org

PLINK binary biallelic genotype table. .bed.vmaj, (automatic), Variant-major .bed file (when input .bed is sample-major) .

https://www.cog-genomics.org

PED files - PLINK: Whole genome data analysis toolset

All commands involve typing plink at the command prompt (e.g. DOS ... results-working-sample-missingness-v1.22 --from rs66537222 --to&nbsp;...

http://zzz.bwh.harvard.edu

plink --file data --recode - PLINK: Whole genome data analysis ...

Recode and reorder a sample. A basic, but often useful feature, is to output a dataset: with the PED file markers reordered for physical position,&nbsp;...

http://zzz.bwh.harvard.edu

PLINK 1.9 - cog-genomics.org

In addition, several key sample x sample and variant x variant matrix ... position-based SNP-like data for thousands of samples, and it is optimized for this setting.

https://www.cog-genomics.org

PLINK tutorial - PLINK: Whole genome data analysis toolset

89 HapMap samples and 80K random SNPs. The first step is to obtain a working copy of PLINK and of the example data files. Make sure you&nbsp;...

http://zzz.bwh.harvard.edu

Standard data input - PLINK 1.9 - cog-genomics.org

VCF files just contain sample IDs, instead of the distinct family and within-family IDs tracked by PLINK. We offer three ways to convert these IDs: --double-id causes&nbsp;...

https://www.cog-genomics.org