plink ped
This page describes the format of binary PED (BED) files. Consider the following example PED file, test.ped: 1 1 0 0 1 0 G G 2 2 C C 1 2 0 0 1 ...,ped + .map fileset. You will need to use the --compound-genotypes flag to load this data in PLINK 1.07, but it's not needed for PLINK 1.9. ,ped file above. .bim (PLINK extended MAP file). Extended variant information file accompanying a .bed binary genotype table. (--make-just- ... , will recode the alleles as 1 and 2 (and the missing genotype will always be 0). Both these commands will create two new files plink.ped plink.map,I'm interested in converting my PED/MAP files to BED/BIM/BAM files to perform association testing. However, my PED file contains missing values coded as "-9" ... ,PLINK text (.ped, .tped...) VCF (.vcf[.gz], .bcf) · Oxford (.gen[.gz], .bgen) · 23andMe text · Generate random · Unusual chromosome IDs · Recombination map. , ped and mydata.map. When PLINK starts it will attempt to contact the web, to check whether there is a more up-to-date version available or ...,跳到 Making a binary PED file - Working with the binary PED file; Summary statistics: missing rates; Summary statistics: allele frequencies; Basic association ... ,ped (sample follow-up regional genotyping .ped file); extra.map (corresponding .map file); pop.cov (population membership variable); command-list.txt (command ... ,As discussed above, PLINK 1.9 will autoconvert the fileset to binary. --ped <filename>. --map <filename>. These are analogous to --bed/--bim/--fam above. (You ...
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 plink ped 相關參考資料
BED file format - PLINK: Whole genome data analysis toolset
This page describes the format of binary PED (BED) files. Consider the following example PED file, test.ped: 1 1 0 0 1 0 G G 2 2 C C 1 2 0 0 1 ... https://zzz.bwh.harvard.edu Data management - PLINK 1.9 - cog-genomics.org
ped + .map fileset. You will need to use the --compound-genotypes flag to load this data in PLINK 1.07, but it's not needed for PLINK 1.9. https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
ped file above. .bim (PLINK extended MAP file). Extended variant information file accompanying a .bed binary genotype table. (--make-just- ... https://www.cog-genomics.org plink --file data - PLINK: Whole genome data analysis toolset
will recode the alleles as 1 and 2 (and the missing genotype will always be 0). Both these commands will create two new files plink.ped plink.map https://zzz.bwh.harvard.edu PLINK 1.9 - Converting PEDMAP to BEDBIMFAM with ...
I'm interested in converting my PED/MAP files to BED/BIM/BAM files to perform association testing. However, my PED file contains missing values coded as "-9" ... https://www.biostars.org PLINK 1.90 beta - cog-genomics.org
PLINK text (.ped, .tped...) VCF (.vcf[.gz], .bcf) · Oxford (.gen[.gz], .bgen) · 23andMe text · Generate random · Unusual chromosome IDs · Recombination map. https://www.cog-genomics.org PLINK format - PLINK: Whole genome data analysis toolset
ped and mydata.map. When PLINK starts it will attempt to contact the web, to check whether there is a more up-to-date version available or ... https://zzz.bwh.harvard.edu PLINK tutorial - PLINK: Whole genome data analysis toolset
跳到 Making a binary PED file - Working with the binary PED file; Summary statistics: missing rates; Summary statistics: allele frequencies; Basic association ... http://zzz.bwh.harvard.edu Resources - PLINK 1.9 - cog-genomics.org
ped (sample follow-up regional genotyping .ped file); extra.map (corresponding .map file); pop.cov (population membership variable); command-list.txt (command ... https://www.cog-genomics.org Standard data input - PLINK 1.9 - cog-genomics.org
As discussed above, PLINK 1.9 will autoconvert the fileset to binary. --ped <filename>. --map <filename>. These are analogous to --bed/--bim/--fam above. (You ... https://www.cog-genomics.org |