plink heterozygous
Allele frequency. --freq [counts | case-control}] ['gz']. --freqx ['gz'] (alias: --frqx). By itself, --freq writes a minor allele frequency report to plink.frq. If you add the ' ... ,plink --file text_fileset --maf 0.05 --make-bed --out binary_fileset ... Normally, heterozygous haploid and nonmale Y chromosome genotype calls are logged to ... ,haploid genotypes present (see plink.hh )." This is usually caused by male heterozygous calls in the X chromosome pseudo-autosomal region. Check the variants ... ,00, Homozygous for first allele in .bim file. 01, Missing genotype. 10, Heterozygous. 11, Homozygous for second allele in .bim file ... ,2018年10月24日 — heterozygosity plink • 8.0k views ... may suggest that: Only one individual with het 0.2 shows relatively high autosomal heterozygosity deviation. ,2020年1月29日 — Guidelines for a robust and uniform ROH analysis in PLINK using ... SNP in a scanning window, adjacent heterozygous SNPs may cause the ... ,--exclude does the same for all listed variants. Note that this is slightly different from PLINK 1.07's behavior when the main input fileset contains duplicate variant ... ,so each byte can store 4 genotypes. PLINK uses the following two-bit coding of genotypes: 00 = A1/A1 (Homozygous non-reference). 01 = A1/A2 (Heterozygous). ,2017年1月25日 — PLINK will generate a number of standard summary statistics that are ... For the males, heterozygous X and heterozygous Y genotypes are ...
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 plink heterozygous 相關參考資料
Basic statistics - PLINK 1.9 - cog-genomics.org
Allele frequency. --freq [counts | case-control}] ['gz']. --freqx ['gz'] (alias: --frqx). By itself, --freq writes a minor allele frequency report to plink.frq. If you add the '&nb... https://www.cog-genomics.org Data management - PLINK 1.9 - cog-genomics.org
plink --file text_fileset --maf 0.05 --make-bed --out binary_fileset ... Normally, heterozygous haploid and nonmale Y chromosome genotype calls are logged to ... https://www.cog-genomics.org Errors and warnings - PLINK 1.9 - cog-genomics.org
haploid genotypes present (see plink.hh )." This is usually caused by male heterozygous calls in the X chromosome pseudo-autosomal region. Check the variants ... https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
00, Homozygous for first allele in .bim file. 01, Missing genotype. 10, Heterozygous. 11, Homozygous for second allele in .bim file ... https://www.cog-genomics.org How to interpret heterozygosity rate ? - Biostars
2018年10月24日 — heterozygosity plink • 8.0k views ... may suggest that: Only one individual with het 0.2 shows relatively high autosomal heterozygosity deviation. https://www.biostars.org How to study runs of homozygosity using PLINK? A guide for ...
2020年1月29日 — Guidelines for a robust and uniform ROH analysis in PLINK using ... SNP in a scanning window, adjacent heterozygous SNPs may cause the ... https://bmcgenomics.biomedcent Input filtering - PLINK 1.9 - cog-genomics.org
--exclude does the same for all listed variants. Note that this is slightly different from PLINK 1.07's behavior when the main input fileset contains duplicate variant ... https://www.cog-genomics.org Module 2: Introduction to PLINK and Quality Control
so each byte can store 4 genotypes. PLINK uses the following two-bit coding of genotypes: 00 = A1/A1 (Homozygous non-reference). 01 = A1/A2 (Heterozygous). https://jvanderw.une.edu.au Summary statistics - PLINK
2017年1月25日 — PLINK will generate a number of standard summary statistics that are ... For the males, heterozygous X and heterozygous Y genotypes are ... http://zzz.bwh.harvard.edu |