microrna blast
If someone want to know, I solve this by simple blast process, convertion to DNA is not necesary; formatdb -i file_data_base.fa -o T -p F.,All miRNAs of one species and their corresponding family alignment picture can be ... Using the BLAST Search a FASTA sequence can be used to find a miRNA ... ,Given a search query, candidate homologs are identified using BLAST search and then tested for their known miRNA properties, such as secondary structure, ... , You can try the the -task option and set it to blastn-short which is optimized for shorter query sequences (<30 nucleotides). From an earlier ...,I did an experiment using microRNA NGS and because of lack of funds we did the alignment of microRNA against zebarfish microrna and I got some novel ... ,Is there any tool/ software to find the microRNAs regulating a given set of known .... So I dont think that BLAST is the proper way to find targets of an miRNA and ... ,MicroRNA Gene Ontology annotations. You might have noticed some additional information on the mature miRNA pages in the last few weeks. See for example: ... ,Single sequence searches: Paste a sequence here to search for similarity with miRBase miRNA sequences (max size 1000 nts). You can choose to search ... , You don't need to use TopHat but it is better to use bowtie instead of BLAST . First of all you need to get rid of the adapter sequences (along ..., download all known miRNA of vertebrate from miRbase and align with your novel miRNA by using bowtie software.While align with bowtie use ...
| 相關軟體 Miranda 資訊 | |
|---|---|
 microrna blast 相關參考資料
miRNA blast to RNA database? - Biostars
If someone want to know, I solve this by simple blast process, convertion to DNA is not necesary; formatdb -i file_data_base.fa -o T -p F. https://www.biostars.org logo miROrtho: the catalogue of animal microRNA genes - CEGG
All miRNAs of one species and their corresponding family alignment picture can be ... Using the BLAST Search a FASTA sequence can be used to find a miRNA ... http://cegg.unige.ch miRNAminer
Given a search query, candidate homologs are identified using BLAST search and then tested for their known miRNA properties, such as secondary structure, ... http://groups.csail.mit.edu How to tune blast parameters when looking for miRNAs? - Biostars
You can try the the -task option and set it to blastn-short which is optimized for shorter query sequences (<30 nucleotides). From an earlier ... https://www.biostars.org MicroRNA blast against miRbase? [Solved] - ResearchGate
I did an experiment using microRNA NGS and because of lack of funds we did the alignment of microRNA against zebarfish microrna and I got some novel ... https://www.researchgate.net Given a gene or its mRNA, is there any tool to find the microRNAs ...
Is there any tool/ software to find the microRNAs regulating a given set of known .... So I dont think that BLAST is the proper way to find targets of an miRNA and ... https://www.researchgate.net miRBase
MicroRNA Gene Ontology annotations. You might have noticed some additional information on the mature miRNA pages in the last few weeks. See for example: ... http://www.mirbase.org Search - miRBase
Single sequence searches: Paste a sequence here to search for similarity with miRBase miRNA sequences (max size 1000 nts). You can choose to search ... http://www.mirbase.org bioinformatics - miRNA analysis just using BLAST against mirbase ...
You don't need to use TopHat but it is better to use bowtie instead of BLAST . First of all you need to get rid of the adapter sequences (along ... https://biology.stackexchange. blast a set of microrna against miRbase microrrna - Biostars
download all known miRNA of vertebrate from miRbase and align with your novel miRNA by using bowtie software.While align with bowtie use ... https://www.biostars.org |