Charles 歷史版本列表 Page5

更新時間：2020-05-23
更新細節：

更新時間：2020-05-22
更新細節：

What's new in this version:

Enhancements:
- Enhanced Sequence view so that when two panels of sequence are visible in a split window, the minimap at the top shows the visible regions from both panels
- Enhanced cloning dialogs to fit on smaller displays
- Support polyA_site point features
- Made various textual enhancements

Fixes:
- Enhanced the GFF3 importer to handle files that mark a single sequence with multiple references
- Fixed an issue that prevented opening of some Vector NTI® .apr alignment files
- Corrected a regression that prevented files in a collection's "Working Set" from being listed in source menus in action dialogs
- Improved stability when importing protein features from another SnapGene file
- Corrected an issue that could result in poor alignments
- Corrected a regression that prevented restriction sites blocked by methylation from being shown in gray in Enzymes View using Numbers mode
- Corrected a regression that prevented sorting of restriction sites in Enzymes view by location of the first site or by distance from the selection
- Ensured proper import of SnapGene online sequence files that contain "&" in their names, such as the COVID-19 genome file
- Corrected a regression that could prevent enzymes in aligned sequences from reflecting the chosen option for displaying enzymes
- Ensured that Enzymes view does not scroll when toggling enzyme visibility
- Corrected an issue that made it difficult to trim aligned sequences by dragging a trimming handle when using double-stranded DNA format
- Improved the export to GenBank and other text formats of features that contain "&" and other symbols in qualifiers
- Improved the appearance of a selection in an aligned sequence when manual trimming partially occludes the selection
- Corrected a regression that prevented invoking the Destroy Restriction Site or Remove Restriction Fragment dialogs by pressing Delete or Backspace in Enzymes view
- Ensured that toggling enzyme visibility no longer marks a file as unsaved
- Fixed an issue that could prevent dashes within gaps from being shown when viewing an alignment to a reference DNA sequence
- Prevented aligned bases from being shown in red at the endpoints of an alignment
- Fixed an issue that could cause "Redo Alignment" to fail for some files
- Ensured that the Edit Feature dialog correctly indicates that segment ranges can overlap if features with overlapping segments were imported from GenBank or other file formats
- Improved the default ratio between the two panel heights when generating a split window
- Prevented unnecessary vertical space from being allocated when laying out aligned sequences in double-stranded DNA format when enzymes are visible
- Improved the file information shown for registered file types in the Windows Explorer and the macOS Finder
- Improved the display of aligned regions in Map view

更新時間：2020-05-22
更新細節：

What's new in this version:

Enhancements:
- Enhanced Sequence view so that when two panels of sequence are visible in a split window, the minimap at the top shows the visible regions from both panels
- Enhanced cloning dialogs to fit on smaller displays
- Support polyA_site point features
- Made various textual enhancements

Fixes:
- Enhanced the GFF3 importer to handle files that mark a single sequence with multiple references
- Fixed an issue that prevented opening of some Vector NTI® .apr alignment files
- Corrected a regression that prevented files in a collection's "Working Set" from being listed in source menus in action dialogs
- Improved stability when importing protein features from another SnapGene file
- Corrected an issue that could result in poor alignments
- Corrected a regression that prevented restriction sites blocked by methylation from being shown in gray in Enzymes View using Numbers mode
- Corrected a regression that prevented sorting of restriction sites in Enzymes view by location of the first site or by distance from the selection
- Ensured proper import of SnapGene online sequence files that contain "&" in their names, such as the COVID-19 genome file
- Corrected a regression that could prevent enzymes in aligned sequences from reflecting the chosen option for displaying enzymes
- Ensured that Enzymes view does not scroll when toggling enzyme visibility
- Corrected an issue that made it difficult to trim aligned sequences by dragging a trimming handle when using double-stranded DNA format
- Improved the export to GenBank and other text formats of features that contain "&" and other symbols in qualifiers
- Improved the appearance of a selection in an aligned sequence when manual trimming partially occludes the selection
- Corrected a regression that prevented invoking the Destroy Restriction Site or Remove Restriction Fragment dialogs by pressing Delete or Backspace in Enzymes view
- Ensured that toggling enzyme visibility no longer marks a file as unsaved
- Fixed an issue that could prevent dashes within gaps from being shown when viewing an alignment to a reference DNA sequence
- Prevented aligned bases from being shown in red at the endpoints of an alignment
- Fixed an issue that could cause "Redo Alignment" to fail for some files
- Ensured that the Edit Feature dialog correctly indicates that segment ranges can overlap if features with overlapping segments were imported from GenBank or other file formats
- Improved the default ratio between the two panel heights when generating a split window
- Prevented unnecessary vertical space from being allocated when laying out aligned sequences in double-stranded DNA format when enzymes are visible
- Improved the file information shown for registered file types in the Windows Explorer and the macOS Finder
- Improved the display of aligned regions in Map view

更新時間：2020-05-09
更新細節：

What's new in this version:

- Fixed a regression that prevented views other than Map view from being accessed in a collection

更新時間：2020-05-09
更新細節：

What's new in this version:

- Fixed a regression that prevented views other than Map view from being accessed in a collection

更新時間：2020-05-09
更新細節：

更新時間：2020-05-07
更新細節：

What's new in this version:

- Version 5.1 provides enhanced flexibility for displaying and annotating sequences. Updates include an improved layout for linear maps, an optional split view for sequence windows, more versatile controls for enzyme visibility, and links between related folders in different areas of a SnapGene collection.

Better Linear Maps:
- Enzyme sites and other annotations in a linear map are now allowed to overlap, thereby reducing map height while preserving legibility

Optional Split View:
- A DNA or protein sequence window can be split to show two different views, or two versions of the same view

Enzyme Visibility Controls:
- Like features and primers, individual enzymes can now be shown or hidden using check boxes

Links Between Collection Areas:
- When a SnapGene collection stores related files in the DNA Files, Protein Files, and Miscellaneous Files areas

Flexible Choice of Reference Type:
- When adding references to the Description Panel, a variety of reference types are now available

Adjustable Threshold for Feature Detection:
- When importing features from another SnapGene file or detecting common features, the match threshold can be adjusted between 80-100%

Batch Edits in Collections:
- A SnapGene collection now supports batch edits of multiple files for flipping sequences, importing features or primers, detecting features or primers, performing BLAST searches, and specifying entries in the Description Panel.
- Optional Stripes for “A” Traces
- In a sequence trace file, the “A” trace can be displayed with stripes to support researchers with color vision disabilities.

Pre-defined “Type IIS Enzymes” Set:
- Type IIS enzymes, which are used for Golden Gate assembly, can be displayed using a pre-defined enzyme set

更新時間：2020-05-07
更新細節：

What's new in this version:

- Version 5.1 provides enhanced flexibility for displaying and annotating sequences. Updates include an improved layout for linear maps, an optional split view for sequence windows, more versatile controls for enzyme visibility, and links between related folders in different areas of a SnapGene collection.

Better Linear Maps:
- Enzyme sites and other annotations in a linear map are now allowed to overlap, thereby reducing map height while preserving legibility

Optional Split View:
- A DNA or protein sequence window can be split to show two different views, or two versions of the same view

Enzyme Visibility Controls:
- Like features and primers, individual enzymes can now be shown or hidden using check boxes

Links Between Collection Areas:
- When a SnapGene collection stores related files in the DNA Files, Protein Files, and Miscellaneous Files areas

Flexible Choice of Reference Type:
- When adding references to the Description Panel, a variety of reference types are now available

Adjustable Threshold for Feature Detection:
- When importing features from another SnapGene file or detecting common features, the match threshold can be adjusted between 80-100%

Batch Edits in Collections:
- A SnapGene collection now supports batch edits of multiple files for flipping sequences, importing features or primers, detecting features or primers, performing BLAST searches, and specifying entries in the Description Panel.
- Optional Stripes for “A” Traces
- In a sequence trace file, the “A” trace can be displayed with stripes to support researchers with color vision disabilities.

Pre-defined “Type IIS Enzymes” Set:
- Type IIS enzymes, which are used for Golden Gate assembly, can be displayed using a pre-defined enzyme set

更新時間：2020-05-06
更新細節：

更新時間：2020-05-05
更新細節：

What's new in this version:

Features:
- virtualbox/disks: Add ability to manage virtual disks for guests

Improvements:
- bin/vagrant: Automatically include global options within commands
- bin/vagrant: Suppress Ruby warnings when not running pre-release version
- communicator/ssh: Add support for configuring SSH connect timeout
- core: Update childprocess gem
- core: Add cli option --no-tty
- core: Overhaul call stack modifications implementation for hooks and triggers
- core/bundler: Cache plugin solution sets to speed up startup times
- config/vm: Addbox_download_options config to specify extra download options for a box
- guest/alpine: Add ansible provisioner guest support
- guest/linux: Update systemd? check to use sudo
- guest/linux: Use systemd if available to halt and reboot system
- guests/linux: Mount smb folders with mfsymlinks option by default
- guest/redhat: Add support for SMB
- guest/windows: Rescue all regular exceptions during reboot wait
- providers/docker: Support catching container name when using podman
- provisioners/docker: Support Centos8
- provisioners/podman: Add Podman as a provisioner
- provisioners/salt: Allow specifying python_version

Bug fixes:
- communicators/winssh: Fix issues with Windows SSH communicator
- core/bundler: Activate vagrant specification when not active
- core/bundler: Properly resolve sets when Vagrant is in prerelease
- core/downloader: Always set -q flag as first option
- core/hooks: Update dynamic action hook implementation to prevent looping
- core/synced_folders: Validate type option if set
- guests/debian: Choose netplan renderer based on network configuration and installed tools
- host/darwin: Quote directories in /etc/exports
- host/linux: Ensure /etc/exports does not contain duplicate records
- host/windows: Check all interfaces for port conflict when host_ip: "0.0.0.0"
- providers/docker: Fix issue where Vagrant fails to remove image if it is in use
- providers/docker: Fix issue with getting correct docker image id from build output
- providers/hyperv: Prevent error when identity reference cannot be translated
- provider/hyperv: Use service id for manipulating vm integration services
- providers/virtualbox: Parse list dhcpservers output on VirtualBox 6.1
- providers/virtualbox: Raise an error if guest IP ends in .1
- provisioners/shell: Ensure windows shell provisioners always get an extension
- util/io: Fix encoding conversion errors